Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs77856818 chr2:238402830 G/A 1.72E-5 108 12.65 20.27 0 KM Plot
LAML rs77859062 chr7:135640098 C/T 7.36E-5 111 13.15 28.93 0 KM Plot
LAML rs77879005 chr14:101208199 A/G 0.000156 110 16.7 10.17 0 KM Plot
LAML rs77887090 chr7:135683456 T/A 7.04E-5 111 13.2 28.47 0 KM Plot
LAML rs7790660 chr7:105167310 C/T 0.000125 110 15.7 13.1 0 KM Plot
LAML rs7790913 chr7:105167304 G/T 0.000125 110 15.7 13.1 0 KM Plot
LAML rs77934459 chr2:19946259 A/T 2.9E-12 110 17.78 15.17 0 KM Plot
LAML rs7795251 chr7:46233503 C/T 0.000121 111 15.7 9.63 0 KM Plot
LAML rs77956735 chr2:238399130 C/T 0.000103 111 12.65 18.25 0 KM Plot
LAML rs78005105 chr7:135664604 A/G 7.36E-5 111 13.15 28.93 0 KM Plot
LAML rs78138847 chr11:34295280 C/T 0.000118 111 13.2 16.3 0 KM Plot
LAML rs78283736 chr19:33926991 G/C 1.9E-5 111 16.77 10.67 3 KM Plot
LAML rs78424790 chr2:3225376 T/C 7.07E-5 109 0 14.7 15.2 KM Plot
LAML rs78425198 chr6:134282042 G/A 0.000172 109 16.17 10.13 1 KM Plot
LAML rs78566927 chr7:135682897 A/G 7.04E-5 111 13.2 28.47 0 KM Plot